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NAR
2011
267views Computer Vision» more  NAR 2011»
14 years 4 months ago
EcoCyc: a comprehensive database of Escherichia coli biology
EcoCyc (http://EcoCyc.org) is a comprehensive model organism database for Escherichia coli K-12 MG1655. From the scientific literature, EcoCyc captures the functions of individual...
Ingrid M. Keseler, Julio Collado-Vides, Alberto Sa...
BIBM
2007
IEEE
144views Bioinformatics» more  BIBM 2007»
15 years 4 months ago
Kinetic Modeling Using BioPAX Ontology
Thousands of biochemical interactions are available for download from curated databases such as Reactome, Pathway Interaction Database and other sources in the Biological Pathways...
Oliver Ruebenacker, Ion I. Moraru, James C. Schaff...
EDBT
2009
ACM
135views Database» more  EDBT 2009»
15 years 3 months ago
Provenance for nested subqueries
Data provenance is essential in applications such as scientific computing, curated databases, and data warehouses. Several systems have been developed that provide provenance fun...
Boris Glavic, Gustavo Alonso
BIB
2010
129views more  BIB 2010»
14 years 10 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
VLDB
2007
ACM
108views Database» more  VLDB 2007»
15 years 10 months ago
Update Exchange with Mappings and Provenance
We consider systems for data sharing among heterogeneous peers related by a network of schema mappings. Each peer has a locally controlled and edited database instance, but wants ...
Todd J. Green, Grigoris Karvounarakis, Zachary G. ...