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» Current approaches to gene regulatory network modelling
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SDM
2007
SIAM
143views Data Mining» more  SDM 2007»
15 years 3 months ago
Less is More: Compact Matrix Decomposition for Large Sparse Graphs
Given a large sparse graph, how can we find patterns and anomalies? Several important applications can be modeled as large sparse graphs, e.g., network traffic monitoring, resea...
Jimeng Sun, Yinglian Xie, Hui Zhang, Christos Falo...
BIBE
2007
IEEE
129views Bioinformatics» more  BIBE 2007»
15 years 5 months ago
Statistial Analysis of nucleosome occupancy and histone modification data
Abstract-- In eukaryotic cells, genomic DNAs wrap around beadlike molecules, called nucleosomes, so as to pack more compactly in the nucleus of the cell. The nucleosome is made up ...
Guo-Cheng Yuan, Jun S. Liu
BMCBI
2008
82views more  BMCBI 2008»
15 years 1 months ago
Studying the functional conservation of cis-regulatory modules and their transcriptional output
Background: Cis-regulatory modules (CRMs) are distinct, genomic regions surrounding the target gene that can independently activate the promoter to drive transcription. The activa...
Denis C. Bauer, Timothy L. Bailey
RECOMB
2007
Springer
15 years 7 months ago
Network Legos: Building Blocks of Cellular Wiring Diagrams
Publicly-available data sets provide detailed and large-scale information on multiple types of molecular interaction networks in a number of model organisms. These multi-modal univ...
T. M. Murali, Corban G. Rivera
122
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EUROPAR
2004
Springer
15 years 7 months ago
Implementing MPI on the BlueGene/L Supercomputer
The BlueGene/L supercomputer will consist of 65,536 dual-processor compute nodes interconnected by two high-speed networks: a three-dimensional torus network and a tree topology ne...
George Almási, Charles Archer, José ...