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» Current approaches to gene regulatory network modelling
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AAAI
2012
13 years 4 months ago
A Spin-Glass Model for Semi-Supervised Community Detection
Current modularity-based community detection methods show decreased performance as relational networks become increasingly noisy. These methods also yield a large number of divers...
Eric Eaton, Rachael Mansbach
BMCBI
2010
138views more  BMCBI 2010»
15 years 1 months ago
A model-independent approach to infer hierarchical codon substitution dynamics
Background: Codon substitution constitutes a fundamental process in molecular biology that has been studied extensively. However, prior studies rely on various assumptions, e.g. r...
Olof Görnerup, Martin Nilsson Jacobi
BMCBI
2007
145views more  BMCBI 2007»
15 years 1 months ago
Colony size measurement of the yeast gene deletion strains for functional genomics
Background: Numerous functional genomics approaches have been developed to study the model organism yeast, Saccharomyces cerevisiae, with the aim of systematically understanding t...
Negar Memarian, Matthew Jessulat, Javad Alirezaie,...
BIOCOMP
2010
14 years 11 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina
SACMAT
2011
ACM
14 years 4 months ago
Modeling data flow in socio-information networks: a risk estimation approach
Information leakage via the networks formed by subjects (e.g., Facebook, Twitter) and objects (e.g., blogosphere) − some of whom may be controlled by malicious insiders − ofte...
Ting Wang, Mudhakar Srivatsa, Dakshi Agrawal, Ling...