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113
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IPPS
2010
IEEE
14 years 10 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
ICPP
2009
IEEE
14 years 10 months ago
Cache-Efficient, Intranode, Large-Message MPI Communication with MPICH2-Nemesis
The emergence of multicore processors raises the need to efficiently transfer large amounts of data between local processes. MPICH2 is a highly portable MPI implementation whose l...
Darius Buntinas, Brice Goglin, David Goodell, Guil...
FASE
2012
Springer
13 years 8 months ago
Cohesive and Isolated Development with Branches
The adoption of distributed version control (DVC), such as Git and Mercurial, in open-source software (OSS) projects has been explosive. Why is this and how are projects using DVC?...
Earl T. Barr, Christian Bird, Peter C. Rigby, Abra...
98
Voted
ICCV
2007
IEEE
16 years 2 months ago
Spherical-Homoscedastic Shapes
Shape analysis requires invariance under translation, scale and rotation. Translation and scale invariance can be realized by normalizing shape vectors with respect to their mean ...
Onur C. Hamsici, Aleix M. Martínez
SC
2009
ACM
15 years 7 months ago
Kepler + Hadoop: a general architecture facilitating data-intensive applications in scientific workflow systems
MapReduce provides a parallel and scalable programming model for data-intensive business and scientific applications. MapReduce and its de facto open source project, called Hadoop...
Jianwu Wang, Daniel Crawl, Ilkay Altintas