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» DNA Computing in Microreactors
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ISMB
1996
15 years 3 months ago
A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA
David Kulp, David Haussler, Martin G. Reese, Frank...
SODA
2000
ACM
106views Algorithms» more  SODA 2000»
15 years 3 months ago
Algorithms for optimizing production DNA sequencing
We discuss the problem of optimally "finishing" a partially sequenced, reconstructed DNA segment. At first sight, this appears to be computationally hard. We construct a...
Éva Czabarka, Goran Konjevod, Madhav V. Mar...
BMCBI
2011
14 years 5 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
DNA
2008
Springer
121views Bioinformatics» more  DNA 2008»
15 years 3 months ago
Isothermal Reactivating Whiplash PCR for Locally Programmable Molecular Computation
Whiplash PCR (WPCR), due to Hagiya et al. [1], is a novel technique for autonomous molecular computation where a state machine is implemented with a single stranded DNA molecule a...
John H. Reif, Urmi Majumder
DNA
2004
Springer
146views Bioinformatics» more  DNA 2004»
15 years 7 months ago
Partial Words for DNA Coding
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Peter Leupold