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» DNA Molecule Classification Using Feature Primitives
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BMCBI
2007
115views more  BMCBI 2007»
14 years 9 months ago
A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
Stephen Winters-Hilt, Carl Baribault
BMCBI
2004
94views more  BMCBI 2004»
14 years 9 months ago
Caryoscope: An Open Source Java application for viewing microarray data in a genomic context
Background: Microarray-based comparative genome hybridization experiments generate data that can be mapped onto the genome. These data are interpreted more easily when represented...
Ihab A. B. Awad, Christian A. Rees, Tina Hernandez...
CICLING
2010
Springer
14 years 9 months ago
A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities
Named Entity Recognition and Classification is being studied for last two decades. Since semantic features take huge amount of training time and are slow in inference, the existing...
Siddhartha Jonnalagadda, Robert Leaman, Trevor Coh...
BMCBI
2008
141views more  BMCBI 2008»
14 years 9 months ago
Functional discrimination of membrane proteins using machine learning techniques
Background: Discriminating membrane proteins based on their functions is an important task in genome annotation. In this work, we have analyzed the characteristic features of amin...
M. Michael Gromiha, Yukimitsu Yabuki
BMCBI
2006
195views more  BMCBI 2006»
14 years 9 months ago
CAFTAN: a tool for fast mapping, and quality assessment of cDNAs
Background: The German cDNA Consortium has been cloning full length cDNAs and continued with their exploitation in protein localization experiments and cellular assays. However, t...
Coral del Val, Vladimir Yurjevich Kuryshev, Karl-H...