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» DNA Sequence Design by Dynamic Neighborhood Searches
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CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
15 years 1 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
ISAAC
2004
Springer
115views Algorithms» more  ISAAC 2004»
15 years 2 months ago
Randomized Algorithms for Motif Detection
Motivation: Motif detection for DNA sequences has many important applications in biological studies, e.g., locating binding sites and regulatory signals, and designing genetic prob...
Lusheng Wang, Liang Dong, Hui Fan
CPHYSICS
2008
106views more  CPHYSICS 2008»
14 years 9 months ago
A space-time-ensemble parallel nudged elastic band algorithm for molecular kinetics simulation
A scalable parallel algorithm has been designed to study long-time dynamics of many-atom systems based on the nudged elastic band method, which performs mutually constrained molec...
Aiichiro Nakano
88
Voted
NAR
2011
248views Computer Vision» more  NAR 2011»
14 years 8 days ago
NCBI GEO: archive for functional genomics data sets - 10 years on
A decade ago, the Gene Expression Omnibus (GEO) database was established at the National Center for Biotechnology Information (NCBI). The original objective of GEO was to serve as...
Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite...
ATAL
2006
Springer
15 years 1 months ago
Multiply-constrained distributed constraint optimization
Distributed constraint optimization (DCOP) has emerged as a useful technique for multiagent coordination. While previous DCOP work focuses on optimizing a single team objective, i...
Emma Bowring, Milind Tambe, Makoto Yokoo