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» DNA coding using finite-context models and arithmetic coding
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CAV
2009
Springer
209views Hardware» more  CAV 2009»
15 years 10 months ago
Static and Precise Detection of Concurrency Errors in Systems Code Using SMT Solvers
Context-bounded analysis is an attractive approach to verification of concurrent programs. Bounding the number of contexts executed per thread not only reduces the asymptotic compl...
Shuvendu K. Lahiri, Shaz Qadeer, Zvonimir Rakamari...
86
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BMCBI
2005
122views more  BMCBI 2005»
14 years 9 months ago
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
Background: Recognition codes for protein-DNA interactions typically assume that the interacting positions contribute additively to the binding energy. While this is known to not ...
Jiajian Liu, Gary D. Stormo
TACAS
2007
Springer
105views Algorithms» more  TACAS 2007»
15 years 3 months ago
Hoare Logic for Realistically Modelled Machine Code
This paper presents a mechanised Hoare-style programming logic framework for assembly level programs. The framework has been designed to fit on top of operational semantics of rea...
Magnus O. Myreen, Michael J. C. Gordon
FSEN
2007
Springer
15 years 3 months ago
Hoare Logic for ARM Machine Code
This paper shows how a machine-code Hoare logic is used to lift reasoning from the tedious operational model of a machine lana manageable level of abstraction without making simpli...
Magnus O. Myreen, Anthony C. J. Fox, Michael J. C....
BMCBI
2005
73views more  BMCBI 2005»
14 years 9 months ago
Empirical codon substitution matrix
Background: Codon substitution probabilities are used in many types of molecular evolution studies such as determining Ka/Ks ratios, creating ancestral DNA sequences or aligning c...
Adrian Schneider, Gina Cannarozzi, Gaston H. Gonne...