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» Data Mining for Genetics: A Genetic Algorithm Approach
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BMCBI
2011
14 years 11 months ago
Pathway-based analysis using reduced gene subsets in genome-wide association studies
Background: Single Nucleotide Polymorphism (SNP) analysis only captures a small proportion of associated genetic variants in Genome-Wide Association Studies (GWAS) partly due to s...
Jingyuan Zhao, Simone Gupta, Mark Seielstad, Jianj...
GECCO
2003
Springer
15 years 9 months ago
Methods for Evolving Robust Programs
Many evolutionary computation search spaces require fitness assessment through the sampling of and generalization over a large set of possible cases as input. Such spaces seem par...
Liviu Panait, Sean Luke
BMCBI
2008
132views more  BMCBI 2008»
15 years 4 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
ICDM
2008
IEEE
175views Data Mining» more  ICDM 2008»
15 years 10 months ago
Overlapping Matrix Pattern Visualization: A Hypergraph Approach
In this work, we study a visual data mining problem: Given a set of discovered overlapping submatrices of interest, how can we order the rows and columns of the data matrix to bes...
Ruoming Jin, Yang Xiang, David Fuhry, Feodor F. Dr...
VLDB
2000
ACM
146views Database» more  VLDB 2000»
15 years 8 months ago
A Database Platform for Bioinformatics
In recent years, new developments in genetics have generated a lot of interest in genomic and proteomic data, investing international significance (and competition) in the fledgli...
Sandeepan Banerjee