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CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
15 years 8 months ago
Using Parallel Algorithms for Searching Molecular Sequence Databases
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity ...
Carla Correa Tavares dos Reis, Rubem P. Mondaini
ESA
1998
Springer
162views Algorithms» more  ESA 1998»
15 years 6 months ago
External Memory Algorithms
Abstract. Data sets in large applications are often too massive to t completely inside the computer's internal memory. The resulting input output communication or I O between ...
Jeffrey Scott Vitter
ISCAPDCS
2007
15 years 3 months ago
PARALLEL-TCOFFEE: A parallel multiple sequence aligner
In this paper we present a parallel implementation of T–Coffee — a widely used multiple sequence alignment package. Our software supports a majority of options provided by the...
Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Sriniv...
OOPSLA
2009
Springer
15 years 9 months ago
Thorn: robust, concurrent, extensible scripting on the JVM
Scripting languages enjoy great popularity due their support for rapid and exploratory development. They typically have lightweight syntax, weak data privacy, dynamic typing, powe...
Bard Bloom, John Field, Nathaniel Nystrom, Johan &...
CCGRID
2009
IEEE
15 years 9 months ago
BLAST Application with Data-Aware Desktop Grid Middleware
—There exists numerous Grid middleware to develop and execute programs on the computational Grid, but they still require intensive work from their users. BitDew is made to facili...
Haiwu He, Gilles Fedak, Bing Tang, Franck Cappello