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HIPC
2007
Springer
15 years 4 months ago
Experiments with a Parallel External Memory System
Abstract. The theory of bulk-synchronous parallel computing has produced a large number of attractive algorithms, which are provably optimal in some sense, but typically require th...
Mohammad R. Nikseresht, David A. Hutchinson, Anil ...
EUROSIM
1994
14 years 11 months ago
Pact: An Environment for Parallel Heuristic Programming
This paper introduces Pact, a new model for parallel heuristic programming on MIMD machines. Designed and implemented as an integrated tool environment, Pact allows the user to dev...
Marc Aguilar, Béat Hirsbrunner
IPPS
2010
IEEE
14 years 8 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
IFL
2005
Springer
107views Formal Methods» more  IFL 2005»
15 years 3 months ago
With-Loop Fusion for Data Locality and Parallelism
With-loops are versatile array comprehensions used in the functional array language SaC to implement universally applicable array operations. We describe the fusion of with-loops a...
Clemens Grelck, Karsten Hinckfuß, Sven-Bodo ...
BCB
2010
156views Bioinformatics» more  BCB 2010»
14 years 5 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...