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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
15 years 8 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
IEEEPACT
2009
IEEE
15 years 8 months ago
Quantifying the Potential of Program Analysis Peripherals
Abstract—As programmers are asked to manage more complicated parallel machines, it is likely that they will become increasingly dependent on tools such as multi-threaded data rac...
Mohit Tiwari, Shashidhar Mysore, Timothy Sherwood
MICRO
2009
IEEE
132views Hardware» more  MICRO 2009»
15 years 8 months ago
Finding concurrency bugs with context-aware communication graphs
Incorrect thread synchronization often leads to concurrency bugs that manifest nondeterministically and are difficult to detect and fix. Past work on detecting concurrency bugs ...
Brandon Lucia, Luis Ceze