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BMCBI
2008
173views more  BMCBI 2008»
15 years 4 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal
BMCBI
2007
138views more  BMCBI 2007»
15 years 4 months ago
A full Bayesian hierarchical mixture model for the variance of gene differential expression
Background: In many laboratory-based high throughput microarray experiments, there are very few replicates of gene expression levels. Thus, estimates of gene variances are inaccur...
Samuel O. M. Manda, Rebecca E. Walls, Mark S. Gilt...
BMCBI
2008
160views more  BMCBI 2008»
15 years 4 months ago
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi
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BMCBI
2008
126views more  BMCBI 2008»
15 years 4 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
DEBU
2008
136views more  DEBU 2008»
15 years 4 months ago
Towards a Unified Declarative and Imperative XQuery Processor
Since the birth of XML, the processing of XML query languages like XQuery/XQueryP has been widely researched in the academic and industrial communities. Most of the approaches con...
Zhen Hua Liu, Anguel Novoselsky, Vikas Arora
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