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IPPS
1999
IEEE
15 years 6 months ago
A Graph Based Framework to Detect Optimal Memory Layouts for Improving Data Locality
In order to extract high levels of performance from modern parallel architectures, the effective management of deep memory hierarchies is very important. While architectural advan...
Mahmut T. Kandemir, Alok N. Choudhary, J. Ramanuja...
BMCBI
2010
118views more  BMCBI 2010»
15 years 2 months ago
Computing H/D-Exchange rates of single residues from data of proteolytic fragments
Background: Protein conformation and protein/protein interaction can be elucidated by solution-phase Hydrogen/ Deuterium exchange (sHDX) coupled to high-resolution mass analysis o...
Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark...
BMCBI
2008
135views more  BMCBI 2008»
15 years 2 months ago
Fregene: Simulation of realistic sequence-level data in populations and ascertained samples
Background: FREGENE simulates sequence-level data over large genomic regions in large populations. Because, unlike coalescent simulators, it works forwards through time, it allows...
Marc Chadeau-Hyam, Clive J. Hoggart, Paul F. O'Rei...
PPOPP
2010
ACM
15 years 11 months ago
Scalable communication protocols for dynamic sparse data exchange
Many large-scale parallel programs follow a bulk synchronous parallel (BSP) structure with distinct computation and communication phases. Although the communication phase in such ...
Torsten Hoefler, Christian Siebert, Andrew Lumsdai...
BMCBI
2010
172views more  BMCBI 2010»
14 years 9 months ago
Nonparametric identification of regulatory interactions from spatial and temporal gene expression data
Background: The correlation between the expression levels of transcription factors and their target genes can be used to infer interactions within animal regulatory networks, but ...
Anil Aswani, Soile V. E. Keränen, James Brown...