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SIAMCOMP
2012
13 years 6 months ago
An Optimal Dynamic Data Structure for Stabbing-Semigroup Queries
Let S be a set of n intervals in R, and let (S, +) be any commutative semigroup. We assign a weight ω(s) ∈ S to each interval in S. For a point x ∈ R, let S(x) ⊆ S be the se...
Pankaj K. Agarwal, Lars Arge, Haim Kaplan, Eyal Mo...
FGCS
2007
107views more  FGCS 2007»
15 years 4 months ago
Algorithmic re-structuring and data replication for protein structure comparison on a GRID
This paper describes a major restructuring of PROuST, a method for protein structure comparison, for an efficient porting to the Grid. PROuST consists of different components: an...
Giovanni Ciriello, M. Comin, Concettina Guerra
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
15 years 8 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya
WEA
2010
Springer
545views Algorithms» more  WEA 2010»
15 years 11 months ago
Experiments on Union-Find Algorithms for the Disjoint-Set Data Structure
Abstract. The disjoint-set data structure is used to maintain a collection of non-overlapping sets of elements from a finite universe. Algorithms that operate on this data structu...
Md. Mostofa Ali Patwary, Jean R. S. Blair, Fredrik...
ESA
2007
Springer
101views Algorithms» more  ESA 2007»
15 years 10 months ago
Linear Data Structures for Fast Ray-Shooting Amidst Convex Polyhedra
We consider the problem of ray shooting in a three-dimensional scene consisting of k (possibly intersecting) convex polyhedra with a total of n facets. That is, we want to preproc...
Haim Kaplan, Natan Rubin, Micha Sharir