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IPPS
2009
IEEE
15 years 6 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
101
Voted
ICCS
2001
Springer
15 years 4 months ago
Adaptive Load Balancing for MPI Programs
Abstract. Parallel Computational Science and Engineering (CSE) applications often exhibit irregular structure and dynamic load patterns. Many such applications have been developed ...
Milind A. Bhandarkar, Laxmikant V. Kalé, Er...
IPPS
2010
IEEE
14 years 9 months ago
Executing task graphs using work-stealing
Abstract--NABBIT is a work-stealing library for execution of task graphs with arbitrary dependencies which is implemented as a library for the multithreaded programming language Ci...
Kunal Agrawal, Charles E. Leiserson, Jim Sukha
FPL
2004
Springer
90views Hardware» more  FPL 2004»
15 years 3 months ago
Dual Fixed-Point: An Efficient Alternative to Floating-Point Computation
Abstract. This paper presents a new data representation known as Dual FiXedpoint (DFX), which employs a single bit exponent to select two different fixedpoint scalings. DFX provide...
Chun Te Ewe, Peter Y. K. Cheung, George A. Constan...
192
Voted
MICCAI
2010
Springer
15 years 5 months ago
  A Fully Automated Approach to Segmentation of Irregularly Shaped Cellular Structures in EM Images
While there has been substantial progress in segmenting natural im- ages, state-of-the-art methods that perform well in such tasks unfortunately tend to underperform ...
A. Lucchi, K. Smith, R. Achanta, V. Lepetit, P. Fu...