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BMCBI
2011
14 years 4 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
CGO
2011
IEEE
14 years 1 months ago
Language and compiler support for auto-tuning variable-accuracy algorithms
—Approximating ideal program outputs is a common technique for solving computationally difficult problems, for adhering to processing or timing constraints, and for performance ...
Jason Ansel, Yee Lok Wong, Cy P. Chan, Marek Olsze...
AIPS
2011
14 years 1 months ago
Planning and Acting in Incomplete Domains
Engineering complete planning domain descriptions is often very costly because of human error or lack of domain knowledge. Learning complete domain descriptions is also very chall...
Christopher Weber, Daniel Bryce
BMCBI
2011
14 years 1 months ago
Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and STRUCTU
Background: The ever increasing sizes of population genetic datasets pose great challenges for population structure analysis. The Tracy-Widom (TW) statistical test is widely used ...
Tulaya Limpiti, Apichart Intarapanich, Anunchai As...
CCGRID
2011
IEEE
14 years 1 months ago
Network-Friendly One-Sided Communication through Multinode Cooperation on Petascale Cray XT5 Systems
—One-sided communication is important to enable asynchronous communication and data movement for Global Address Space (GAS) programming models. Such communication is typically re...
Xinyu Que, Weikuan Yu, Vinod Tipparaju, Jeffrey S....
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