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» Data parallelism in bioinformatics workflows using Hydra
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ICCSA
2004
Springer
15 years 5 months ago
A Sequence-Focused Parallelisation of EMBOSS on a Cluster of Workstations
Abstract. A number of individual bioinformatics applications (particularly BLAST and other sequence searching methods) have recently been implemented over clusters of workstations ...
Karl Podesta, Martin Crane, Heather J. Ruskin
92
Voted
CCGRID
2005
IEEE
15 years 5 months ago
Task scheduling strategies for workflow-based applications in grids
Grid applications require allocating a large number of heterogeneous tasks to distributed resources. A good allocation is critical for efficient execution. However, many existing ...
James Blythe, S. Jain, Ewa Deelman, Yolanda Gil, K...
125
Voted
COMPLIFE
2006
Springer
15 years 3 months ago
Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level
Background: The computer-assisted detection of small molecules by mass spectrometry in biological samples provides a snapshot of thousands of peptides, protein fragments and prote...
Tim O. F. Conrad, Alexander Leichtle, Andre Hageh&...
SC
2000
ACM
15 years 4 months ago
Data Access Performance in a Large and Dynamic Pharmaceutical Drug Candidate Database
An explosion in the amount of data generated through chemical and biological experimentation has been observed in recent years. This rapid proliferation of vast amounts of data ha...
Zina Ben-Miled, Yang Liu, David Powers, Omran A. B...
GCCB
2006
15 years 3 months ago
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs
During the last few years more and more functionalities of RNA have been discovered that were previously thought of being carried out by proteins alone. One of the most striking di...
Patrick May, Gunnar W. Klau, Markus Bauer, Thomas ...