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WEBI
2009
Springer
15 years 4 months ago
Fast Matching for All Pairs Similarity Search
All pairs similarity search is the problem of finding all pairs of records that have a similarity score above the specified threshold. Many real-world systems like search engine...
Amit C. Awekar, Nagiza F. Samatova
BMCBI
2006
122views more  BMCBI 2006»
14 years 9 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
EVOW
2010
Springer
15 years 4 months ago
A Local Search Appproach for Transmembrane Segment and Signal Peptide Discrimination
Discriminating between secreted and membrane proteins is a challenging task. This is particularly true for discriminating between transmembrane segments and signal peptides because...
Sami Laroum, Dominique Tessier, Béatrice Du...
BMCBI
2006
145views more  BMCBI 2006»
14 years 9 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...
ICDE
2003
IEEE
139views Database» more  ICDE 2003»
15 years 11 months ago
Super-Fast XML Wrapper Generation in DB2: A Demonstration
The XML Wrapper is a new feature of the federated database capabilities of DB2/UDB v8. It enables users and applications to issue SQL queries against XML data from a variety of so...
Vanja Josifovski, Sabine Massmann, Felix Naumann