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» Database Searching with DNA and Protein Sequences: An Introd...
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BMCBI
2007
190views more  BMCBI 2007»
15 years 1 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
NAR
2000
127views more  NAR 2000»
15 years 1 months ago
The EMBL Nucleotide Sequence Database
The European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database (http://www.ebi.ac. uk/embl/index.html ) is maintained at the European Bioinformatics Institute (EBI)...
Wendy Baker, Alexandra van den Broek, Evelyn Camon...
99
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SIGPRO
2008
104views more  SIGPRO 2008»
15 years 1 months ago
Macromolecular sequence analysis using multiwindow Gabor representations
Multiwindow Gabor representations highlight fingerprints suitable for indexing of macromolecules, based on their local periodic structures. This paper presents a technique for ana...
Nagesh K. Subbanna, Yehoshua Y. Zeevi
144
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BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
15 years 7 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
INFOSCALE
2006
ACM
15 years 7 months ago
Scalable hardware accelerator for comparing DNA and protein sequences
Abstract— Comparing genetic sequences is a well-known problem in bioinformatics. Newly determined sequences are being compared to known sequences stored in databases in order to ...
Philippe Faes, Bram Minnaert, Mark Christiaens, Er...