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» Databases and Algorithms for Pathway Bioinformatics
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BIBE
2008
IEEE
272views Bioinformatics» more  BIBE 2008»
15 years 4 months ago
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU
— This paper describes a design and implementation of the Smith-Waterman algorithm accelerated on the graphics processing unit (GPU). Our method is implemented using compute uniï...
Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara
GECCO
2005
Springer
112views Optimization» more  GECCO 2005»
15 years 3 months ago
A multiple objective evolutionary algorithm for multiple sequence alignment
The problem of multiple sequence alignment is important for bioinformatics. This problem is widely studied and a popular tool to solve this problem is Clustal X. This work introdu...
Pasut Seeluangsawat, Prabhas Chongstitvatana
MICCAI
2009
Springer
15 years 10 months ago
Think Global, Act Local; Projectome Estimation with BlueMatter
Estimating the complete set of white matter fascicles (the projectome) from diffusion data requires evaluating an enormous number of potential pathways; consequently, most algorith...
Anthony Sherbondy, Robert Dougherty, Rajagopal A...
BMCBI
2006
190views more  BMCBI 2006»
14 years 9 months ago
VANTED: A system for advanced data analysis and visualization in the context of biological networks
Background: Recent advances with high-throughput methods in life-science research have increased the need for automatized data analysis and visual exploration techniques. Sophisti...
Björn H. Junker, Christian Klukas, Falk Schre...
108
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CSB
2005
IEEE
189views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks
We developed a machine learning system for determining gene functions from heterogeneous sources of data sets using a Weighted Naive Bayesian Network (WNB). The knowledge of gene ...
Xutao Deng, Huimin Geng, Hesham H. Ali