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» Databases and Algorithms for Pathway Bioinformatics
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BMCBI
2010
154views more  BMCBI 2010»
14 years 7 months ago
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
Background: External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gen...
Andreas Kowarsch, Florian Blöchl, Sebastian B...
NAR
2007
111views more  NAR 2007»
14 years 9 months ago
PEDANT genome database: 10 years online
The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The...
M. Louise Riley, Thorsten Schmidt, Irena I. Artamo...
SSDBM
2008
IEEE
149views Database» more  SSDBM 2008»
15 years 3 months ago
Query Planning for Searching Inter-dependent Deep-Web Databases
Increasingly, many data sources appear as online databases, hidden behind query forms, thus forming what is referred to as the deep web. It is desirable to have systems that can pr...
Fan Wang, Gagan Agrawal, Ruoming Jin
BIBE
2005
IEEE
107views Bioinformatics» more  BIBE 2005»
15 years 3 months ago
DSIM: A Distance-Based Indexing Method for Genomic Sequences
In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the ge...
Xia Cao, Beng Chin Ooi, HweeHwa Pang, Kian-Lee Tan...
CSB
2005
IEEE
146views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data
A good number of biclustering algorithms have been proposed for grouping gene expression data. Many of them have adopted matrix norms to define the similarity score of a bicluste...
Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos