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» Databases and Algorithms for Pathway Bioinformatics
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BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
14 years 9 months ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...
BIOINFORMATICS
2008
203views more  BIOINFORMATICS 2008»
14 years 9 months ago
The SGN comparative map viewer
Background: A common approach to understanding the genetic basis of complex traits is through identification of associated quantitative trait loci (QTL). Fine mapping QTLs require...
Lukas A. Mueller, Adri A. Mills, Beth Skwarecki, R...
ICDE
2008
IEEE
157views Database» more  ICDE 2008»
15 years 11 months ago
Querying and Managing Provenance through User Views in Scientific Workflows
Abstract-- Workflow systems have become increasingly popular for managing experiments where many bioinformatics tasks are chained together. Due to the large amount of data generate...
Olivier Biton, Sarah Cohen Boulakia, Susan B. Davi...
NAR
2000
120views more  NAR 2000»
14 years 9 months ago
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
The WIT (What Is There) (http://wit.mcs.anl.gov/WIT2/ ) system has been designed to support comparative analysis of sequenced genomes and to generate metabolic reconstructions bas...
Ross A. Overbeek, Niels Larsen, Gordon D. Pusch, M...
TC
2010
14 years 7 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...