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» Databases and Algorithms for Pathway Bioinformatics
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BMCBI
2006
114views more  BMCBI 2006»
14 years 9 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
68
Voted
ICEIS
2003
IEEE
15 years 2 months ago
The Protein Structure Prediction Module of the Prot-Grid Information System
: In this work, we describe the protein secondary structure prediction module of a distributed bio-informatics system. Protein databases contain over a million of sequenced protein...
Dimitrios Vogiatzis, Dimitrios Frosyniotis, George...
SIGMOD
2010
ACM
308views Database» more  SIGMOD 2010»
14 years 7 months ago
GBLENDER: towards blending visual query formulation and query processing in graph databases
Given a graph database D and a query graph g, an exact subgraph matching query asks for the set S of graphs in D that contain g as a subgraph. This type of queries find important...
Changjiu Jin, Sourav S. Bhowmick, Xiaokui Xiao, Ja...
SIGMOD
2005
ACM
166views Database» more  SIGMOD 2005»
15 years 9 months ago
Substructure Similarity Search in Graph Databases
Advanced database systems face a great challenge raised by the emergence of massive, complex structural data in bioinformatics, chem-informatics, and many other applications. The ...
Xifeng Yan, Philip S. Yu, Jiawei Han
BIBM
2010
IEEE
139views Bioinformatics» more  BIBM 2010»
14 years 7 months ago
Scalable, updatable predictive models for sequence data
The emergence of data rich domains has led to an exponential growth in the size and number of data repositories, offering exciting opportunities to learn from the data using machin...
Neeraj Koul, Ngot Bui, Vasant Honavar