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» Databases and Algorithms for Pathway Bioinformatics
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WWW
2007
ACM
15 years 10 months ago
SPARQ2L: towards support for subgraph extraction queries in rdf databases
Many applications in analytical domains often have the need to "connect the dots" i.e., query about the structure of data. In bioinformatics for example, it is typical t...
Kemafor Anyanwu, Angela Maduko, Amit P. Sheth
BMCBI
2010
110views more  BMCBI 2010»
14 years 9 months ago
TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach
Background: One of main aims of Molecular Biology is the gain of knowledge about how molecular components interact each other and to understand gene function regulations. Using mi...
Pietro Zoppoli, Sandro Morganella, Michele Ceccare...
100
Voted
EDBT
2012
ACM
228views Database» more  EDBT 2012»
12 years 12 months ago
Finding maximal k-edge-connected subgraphs from a large graph
In this paper, we study how to find maximal k-edge-connected subgraphs from a large graph. k-edge-connected subgraphs can be used to capture closely related vertices, and findin...
Rui Zhou, Chengfei Liu, Jeffrey Xu Yu, Weifa Liang...
SSDBM
2003
IEEE
123views Database» more  SSDBM 2003»
15 years 2 months ago
MoBIoS: A Metric-Space DBMS to Support Biological Discovery
MoBIoS is a specialized database management system whose storage manager is based on metric-space indexing, and whose query language entails biological data types. When relational...
Daniel P. Miranker, Weijia Xu, Rui Mao
BMCBI
2006
116views more  BMCBI 2006»
14 years 9 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick