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» Databases and Algorithms for Pathway Bioinformatics
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SAC
2004
ACM
15 years 2 months ago
Time-frequency feature detection for time-course microarray data
Gene clustering based on microarray data provides useful functional information to the working biologists. Many current gene-clustering algorithms rely on Euclidean-based distance...
Jiawu Feng, Paolo Emilio Barbano, Bud Mishra
BMCBI
2010
135views more  BMCBI 2010»
14 years 9 months ago
Integration and visualization of systems biology data in context of the genome
Background: High-density tiling arrays and new sequencing technologies are generating rapidly increasing volumes of transcriptome and protein-DNA interaction data. Visualization a...
J. Christopher Bare, Tie Koide, David J. Reiss, Da...
DAWAK
2004
Springer
15 years 2 months ago
Algorithms for Discovery of Frequent Superset, Rather than Frequent Subset
Abstract. In this paper, we propose a novel mining task: mining frequent superset from the database of itemsets that is useful in bioinformatics, e-learning systems, jobshop schedu...
Zhung-Xun Liao, Man-Kwan Shan
BMCBI
2010
100views more  BMCBI 2010»
14 years 9 months ago
Trimming of mammalian transcriptional networks using network component analysis
Background: Network Component Analysis (NCA) has been used to deduce the activities of transcription factors (TFs) from gene expression data and the TF-gene binding relationship. ...
Linh M. Tran, Daniel R. Hyduke, James C. Liao
CSB
2004
IEEE
110views Bioinformatics» more  CSB 2004»
15 years 1 months ago
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error
For the identification of novel proteins using MS/MS, de novo sequencing software computes one or several possible amino acid sequences (called sequence tags) for each MS/MS spect...
Yonghua Han, Bin Ma, Kaizhong Zhang