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» Databases and Algorithms for Pathway Bioinformatics
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BIBE
2009
IEEE
135views Bioinformatics» more  BIBE 2009»
14 years 7 months ago
Vascular Tree Construction with Anatomical Realism for Retinal Images
In this paper, we present a method to automatically extract the vessel segments and construct the vascular tree with anatomical realism from a color retinal image. The significanc...
Kai-Shung Lin, Chia-Ling Tsai, Michal Sofka, Chih-...
BMCBI
2006
120views more  BMCBI 2006»
14 years 9 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
BMCBI
2008
129views more  BMCBI 2008»
14 years 9 months ago
Motif-directed network component analysis for regulatory network inference
Background: Network Component Analysis (NCA) has shown its effectiveness in discovering regulators and inferring transcription factor activities (TFAs) when both microarray data a...
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wan...
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
15 years 4 months ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra
Mass spectrometry is a particularly useful technology for the rapid and robust identification of peptides and proteins in complex mixtures. Peptide sequences can be identified b...
Aaron A. Klammer, Christine C. Wu, Michael J. MacC...