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» Databases and Algorithms for Pathway Bioinformatics
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SIGMOD
2004
ACM
196views Database» more  SIGMOD 2004»
15 years 9 months ago
FARMER: Finding Interesting Rule Groups in Microarray Datasets
Microarray datasets typically contain large number of columns but small number of rows. Association rules have been proved to be useful in analyzing such datasets. However, most e...
Gao Cong, Anthony K. H. Tung, Xin Xu, Feng Pan, Ji...
BMCBI
2010
132views more  BMCBI 2010»
14 years 9 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...
SASP
2009
IEEE
291views Hardware» more  SASP 2009»
15 years 4 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
CSB
2003
IEEE
121views Bioinformatics» more  CSB 2003»
15 years 2 months ago
Epitope Prediction Algorithms for Peptide based Vaccine Design
Peptide-based vaccines, in which small peptides derived from target proteins (epitopes) are used to provoke an immune reaction, have attracted considerable attention recently as a...
Liliana Florea, Bjarni V. Halldórsson, Oliv...
CIKM
2005
Springer
15 years 3 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...