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» Databases and Algorithms for Pathway Bioinformatics
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SIGSOFT
2010
ACM
14 years 7 months ago
Software is data too
Software systems are designed and engineered to process data. However, software is data too. The size and variety of today's software artifacts and the multitude of stakehold...
Andrian Marcus, Tim Menzies
BMCBI
2006
144views more  BMCBI 2006»
14 years 9 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...
CIKM
2010
Springer
14 years 6 months ago
Regularization and feature selection for networked features
In the standard formalization of supervised learning problems, a datum is represented as a vector of features without prior knowledge about relationships among features. However, ...
Hongliang Fei, Brian Quanz, Jun Huan
RECOMB
2005
Springer
15 years 9 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
ICDE
2004
IEEE
115views Database» more  ICDE 2004»
15 years 10 months ago
Unordered Tree Mining with Applications to Phylogeny
Frequent structure mining (FSM) aims to discover and extract patterns frequently occurring in structural data, such as trees and graphs. FSM finds many applications in bioinformat...
Dennis Shasha, Jason Tsong-Li Wang, Sen Zhang