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» Databases and Algorithms for Pathway Bioinformatics
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BMCBI
2006
159views more  BMCBI 2006»
14 years 9 months ago
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background: Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million...
Elijah Roberts, John Eargle, Dan Wright, Zaida Lut...
SIGMOD
2010
ACM
223views Database» more  SIGMOD 2010»
15 years 2 months ago
Finding maximal cliques in massive networks by H*-graph
Maximal clique enumeration (MCE) is a fundamental problem in graph theory and has important applications in many areas such as social network analysis and bioinformatics. The prob...
James Cheng, Yiping Ke, Ada Wai-Chee Fu, Jeffrey X...
KDD
2008
ACM
115views Data Mining» more  KDD 2008»
15 years 9 months ago
SPIRAL: efficient and exact model identification for hidden Markov models
Hidden Markov models (HMMs) have received considerable attention in various communities (e.g, speech recognition, neurology and bioinformatic) since many applications that use HMM...
Yasuhiro Fujiwara, Yasushi Sakurai, Masashi Yamamu...
KDD
2006
ACM
157views Data Mining» more  KDD 2006»
15 years 9 months ago
Using structure indices for efficient approximation of network properties
Statistics on networks have become vital to the study of relational data drawn from areas such as bibliometrics, fraud detection, bioinformatics, and the Internet. Calculating man...
Matthew J. Rattigan, Marc Maier, David Jensen
69
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CISIS
2010
IEEE
15 years 4 months ago
Scalability Analysis of Progressive Alignment on a Multicore
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...
Sebastian Isaza, Friman Sánchez, Georgi Gay...