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» Databases and Algorithms for Pathway Bioinformatics
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ICDM
2006
IEEE
176views Data Mining» more  ICDM 2006»
15 years 3 months ago
Razor: mining distance-constrained embedded subtrees
Due to their capability for expressing semantics and relationships among data objects, semi-structured documents have become a common way of representing domain knowledge. Compari...
Henry Tan, Tharam S. Dillon, Fedja Hadzic, Elizabe...
CIKM
2009
Springer
15 years 4 months ago
SPIDER: a system for scalable, parallel / distributed evaluation of large-scale RDF data
RDF is a data model for representing labeled directed graphs, and it is used as an important building block of semantic web. Due to its flexibility and applicability, RDF has bee...
Hyunsik Choi, Jihoon Son, YongHyun Cho, Min Kyoung...
BMCBI
2007
158views more  BMCBI 2007»
14 years 9 months ago
MetaLook: a 3D visualisation software for marine ecological genomics
Background: Marine ecological genomics can be defined as the application of genomic sciences to understand the structure and function of marine ecosystems. In this field of resear...
Thierry Lombardot, Renzo Kottmann, Gregory Giulian...
NAR
2008
138views more  NAR 2008»
14 years 9 months ago
TarO: a target optimisation system for structural biology
TarO (http://www.compbio.dundee.ac.uk/taro) offers a single point of reference for key bioinformatics analyses relevant to selecting proteins or domains for study by structural bi...
Ian M. Overton, C. A. Johannes van Niekerk, Lester...
BMCBI
2006
120views more  BMCBI 2006»
14 years 9 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu