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» Databases and Algorithms for Pathway Bioinformatics
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GCB
2005
Springer
138views Biometrics» more  GCB 2005»
15 years 2 months ago
Inferring Regulatory Systems with Noisy Pathway Information
: With increasing number of pathways available in public databases, the process of inferring gene regulatory networks becomes more and more feasible. The major problem of most of t...
Christian Spieth, Felix Streichert, Nora Speer, An...
ISCIS
2009
Springer
15 years 4 months ago
A web-based data source for metabolomics
—With the development of improved and cost-effective technologies, it is now possible to detect thousands of metabolites in biofluids or specific organs, and reliably quantify th...
Ali Cakmak, Arun Dsouza, Richard Hanson, Gultekin ...
SAC
2009
ACM
15 years 4 months ago
Capturing truthiness: mining truth tables in binary datasets
We introduce a new data mining problem: mining truth tables in binary datasets. Given a matrix of objects and the properties they satisfy, a truth table identifies a subset of pr...
Clifford Conley Owens III, T. M. Murali, Naren Ram...
SIGMOD
2004
ACM
121views Database» more  SIGMOD 2004»
15 years 9 months ago
An Optimal Algorithm for Querying Tree Structures and its Applications in Bioinformatics
Trees and graphs are widely used to model biological databases. Providing efficient algorithms to support tree-based or graph-based querying is therefore an important issue. In th...
Hsiao-Fei Liu, Ya-Hui Chang, Kun-Mao Chao
WABI
2007
Springer
15 years 3 months ago
Bringing Folding Pathways into Strand Pairing Prediction
Abstract. The topology of β-sheets is defined by the pattern of hydrogenbonded strand pairing. Therefore, predicting hydrogen bonded strand partners is a fundamental step towards...
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka