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» Databases and Algorithms for Pathway Bioinformatics
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BIBE
2007
IEEE
121views Bioinformatics» more  BIBE 2007»
15 years 1 months ago
Tracing Lineage in Multi-version Scientific Databases
The critical need for better tracing of lineage in scientific databases is well known [6]. It is clear that performance is not an issue for most domain scientists
Mingwu Zhang, Daisuke Kihara, Sunil Prabhakar
BMCBI
2007
133views more  BMCBI 2007»
14 years 9 months ago
GenMAPP 2: new features and resources for pathway analysis
Background: Microarray technologies have evolved rapidly, enabling biologists to quantify genome-wide levels of gene expression, alternative splicing, and sequence variations for ...
Nathan Salomonis, Kristina Hanspers, Alexander C. ...
BIOINFORMATICS
2006
135views more  BIOINFORMATICS 2006»
14 years 9 months ago
Effective similarity measures for expression profiles
It is commonly accepted that genes with similar expression profiles are functionally related. However, there are many ways one can measure the similarity of expression profiles, a...
Golan Yona, William Dirks, Shafquat Rahman, David ...
NAR
2011
202views Computer Vision» more  NAR 2011»
14 years 8 days ago
PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family
PREX (http://www.csb.wfu.edu/prex/) is a database of currently 3516 peroxiredoxin (Prx or PRDX) protein sequences unambiguously classified into one of six distinct subfamilies. Pe...
Laura Soito, Chris Williamson, Stacy T. Knutson, J...
JCDL
2003
ACM
112views Education» more  JCDL 2003»
15 years 2 months ago
Protein Association Discovery in Biomedical Literature
Protein association discovery can directly contribute toward developing protein pathways; hence it is a significant problem in bioinformatics. LUCAS (Library of User-Oriented Conc...
Yueyu Fu, Javed Mostafa, Kazuhiro Seki