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ALIFE
2007
14 years 10 months ago
Synchronization Phenomena in Surface-Reaction Models of Protocells
A class of generic models of protocells is introduced, which are inspired by the “Los Alamos bug” is but which, due to their abstraction level, can be applied to a wider set o...
Roberto Serra, Timoteo Carletti, Irene Poli
BMCBI
2010
130views more  BMCBI 2010»
14 years 10 months ago
The behaviour of random forest permutation-based variable importance measures under predictor correlation
Background: Random forests (RF) have been increasingly used in applications such as genome-wide association and microarray studies where predictor correlation is frequently observ...
Kristin K. Nicodemus, James D. Malley, Carolin Str...
BMCBI
2010
143views more  BMCBI 2010»
14 years 10 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
BMCBI
2010
185views more  BMCBI 2010»
14 years 10 months ago
ABCtoolbox: a versatile toolkit for approximate Bayesian computations
Background: The estimation of demographic parameters from genetic data often requires the computation of likelihoods. However, the likelihood function is computationally intractab...
Daniel Wegmann, Christoph Leuenberger, Samuel Neue...
BMCBI
2010
149views more  BMCBI 2010»
14 years 10 months ago
Identifying common prognostic factors in genomic cancer studies: A novel index for censored outcomes
Background: With the growing number of public repositories for high-throughput genomic data, it is of great interest to combine the results produced by independent research groups...
Sigrid Rouam, Thierry Moreau, Philippe Broët