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TREC
2003
14 years 11 months ago
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification
k gene annotations. Our indexing machinery produces per indexed MEDLINE abstract a list of concepts with an accompanying weight, termed a fingerprint. Searching is done by matching...
Rob Jelier, Martijn J. Schuemie, C. Christiaan van...
ISMB
1994
14 years 11 months ago
Stochastic Motif Extraction Using Hidden Markov Model
In this paper, westudy the application of an ttMM(hidden Markov model) to the problem of representing protein sequencesby a stochastic motif. Astochastic protein motif represents ...
Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya
BIB
2010
129views more  BIB 2010»
14 years 10 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
BMCBI
2010
110views more  BMCBI 2010»
14 years 10 months ago
OLS Dialog: An open-source front end to the Ontology Lookup Service
Background: With the growing amount of biomedical data available in public databases it has become increasingly important to annotate data in a consistent way in order to allow ea...
Harald Barsnes, Richard G. Côté, Ingv...
BMCBI
2010
103views more  BMCBI 2010»
14 years 10 months ago
Detecting internally symmetric protein structures
Background: Many functional proteins have a symmetric structure. Most of these are multimeric complexes, which are made of non-symmetric monomers arranged in a symmetric manner. H...
Changhoon Kim, Jodi Basner, Byungkook Lee