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TREC
2003
15 years 1 months ago
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification
k gene annotations. Our indexing machinery produces per indexed MEDLINE abstract a list of concepts with an accompanying weight, termed a fingerprint. Searching is done by matching...
Rob Jelier, Martijn J. Schuemie, C. Christiaan van...
ISMB
1994
15 years 1 months ago
Stochastic Motif Extraction Using Hidden Markov Model
In this paper, westudy the application of an ttMM(hidden Markov model) to the problem of representing protein sequencesby a stochastic motif. Astochastic protein motif represents ...
Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya
BIB
2010
129views more  BIB 2010»
14 years 12 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
BMCBI
2010
110views more  BMCBI 2010»
14 years 12 months ago
OLS Dialog: An open-source front end to the Ontology Lookup Service
Background: With the growing amount of biomedical data available in public databases it has become increasingly important to annotate data in a consistent way in order to allow ea...
Harald Barsnes, Richard G. Côté, Ingv...
BMCBI
2010
103views more  BMCBI 2010»
14 years 12 months ago
Detecting internally symmetric protein structures
Background: Many functional proteins have a symmetric structure. Most of these are multimeric complexes, which are made of non-symmetric monomers arranged in a symmetric manner. H...
Changhoon Kim, Jodi Basner, Byungkook Lee