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» De Novo Sequencing of Nonribosomal Peptides
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SODA
2000
ACM
111views Algorithms» more  SODA 2000»
14 years 11 months ago
A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry
Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush...
RECOMB
2003
Springer
15 years 10 months ago
On de novo interpretation of tandem mass spectra for peptide identification
The correct interpretation of tandem mass spectra is a difficult problem, even when it is limited to scoring peptides against a database. De novo sequencing is considerably harder...
Vineet Bafna, Nathan Edwards
BMCBI
2010
152views more  BMCBI 2010»
14 years 9 months ago
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
Background: High-resolution tandem mass spectra can now be readily acquired with hybrid instruments, such as LTQ-Orbitrap and LTQ-FT, in high-throughput shotgun proteomics workflo...
Chongle Pan, Byung-Hoon Park, William H. McDonald,...
CSB
2004
IEEE
110views Bioinformatics» more  CSB 2004»
15 years 1 months ago
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error
For the identification of novel proteins using MS/MS, de novo sequencing software computes one or several possible amino acid sequences (called sequence tags) for each MS/MS spect...
Yonghua Han, Bin Ma, Kaizhong Zhang
BMCBI
2010
117views more  BMCBI 2010»
14 years 9 months ago
Better score function for peptide identification with ETD MS/MS spectra
Background: Tandem mass spectrometry (MS/MS) has become the primary way for protein identification in proteomics. A good score function for measuring the match quality between a p...
Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma