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BMCBI
2007
174views more  BMCBI 2007»
15 years 2 months ago
Inferring activity changes of transcription factors by binding association with sorted expression profiles
Background: The identification of transcription factors (TFs) associated with a biological process is fundamental to understanding its regulatory mechanisms. From microarray data,...
Chao Cheng, Xiting Yan, Fengzhu Sun, Lei M. Li
BMCBI
2008
116views more  BMCBI 2008»
15 years 2 months ago
Impact of residue accessible surface area on the prediction of protein secondary structures
Background: The problem of accurate prediction of protein secondary structure continues to be one of the challenging problems in Bioinformatics. It has been previously suggested t...
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk...
CGF
2008
80views more  CGF 2008»
15 years 2 months ago
A Semi-Lagrangian CIP Fluid Solver without Dimensional Splitting
In this paper, we propose a new constrained interpolation profile (CIP) method that is stable and accurate but requires less amount of computation compared to existing CIP-based s...
Doyub Kim, Oh-Young Song, Hyeong-Seok Ko
BMCBI
2007
100views more  BMCBI 2007»
15 years 2 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
136
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KES
2008
Springer
15 years 2 months ago
Classification and Retrieval through Semantic Kernels
Abstract. This work proposes a family of language-independent semantic kernel functions defined for individuals in an ontology. This allows exploiting wellfounded kernel methods fo...
Claudia d'Amato, Nicola Fanizzi, Floriana Esposito