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CPM
2004
Springer
144views Combinatorics» more  CPM 2004»
15 years 2 months ago
A Simple Optimal Representation for Balanced Parentheses
We consider succinct, or highly space-efficient, representations of a (static) string consisting of n pairs of balanced parentheses, that support natural operations such as findi...
Richard F. Geary, Naila Rahman, Rajeev Raman, Venk...
GECCO
2003
Springer
15 years 2 months ago
A Kernighan-Lin Local Improvement Heuristic That Solves Some Hard Problems in Genetic Algorithms
We present a Kernighan-Lin style local improvement heuristic for genetic algorithms. We analyze the run-time cost of the heuristic. We demonstrate through experiments that the heur...
William A. Greene
BMCBI
2010
98views more  BMCBI 2010»
14 years 9 months ago
An optimized TOPS+ comparison method for enhanced TOPS models
nd: Although methods based on highly abstract descriptions of protein structures, such as VAST and TOPS, can perform very fast protein structure comparison, the results can lack a...
Mallika Veeramalai, David Gilbert, Gabriel Valient...
PR
2011
14 years 4 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...
WWW
2005
ACM
15 years 10 months ago
Object-level ranking: bringing order to Web objects
In contrast with the current Web search methods that essentially do document-level ranking and retrieval, we are exploring a new paradigm to enable Web search at the object level....
Zaiqing Nie, Yuanzhi Zhang, Ji-Rong Wen, Wei-Ying ...