Sciweavers

112 search results - page 10 / 23
» Defining functional distances over Gene Ontology
Sort
View
CBMS
2008
IEEE
15 years 5 months ago
A New Path Length Measure Based on GO for Gene Similarity with Evaluation using SGD Pathways
We propose a new method for measuring the semantic similarity of genes based on path length between their annotation terms in the Gene Ontology. Our method applies an exponential ...
Anurag Nagar, Hisham Al-Mubaid
ICDE
1999
IEEE
139views Database» more  ICDE 1999»
16 years 10 days ago
Clustering Large Datasets in Arbitrary Metric Spaces
Clustering partitions a collection of objects into groups called clusters, such that similar objects fall into the same group. Similarity between objects is defined by a distance ...
Venkatesh Ganti, Raghu Ramakrishnan, Johannes Gehr...
BMCBI
2007
135views more  BMCBI 2007»
14 years 11 months ago
Measuring similarities between gene expression profiles through new data transformations
Background: Clustering methods are widely used on gene expression data to categorize genes with similar expression profiles. Finding an appropriate (dis)similarity measure is crit...
Kyungpil Kim, Shibo Zhang, Keni Jiang, Li Cai, In-...
BIBM
2007
IEEE
137views Bioinformatics» more  BIBM 2007»
15 years 5 months ago
A Multi-metric Similarity Based Analysis of Microarray Data
Clustering has been shown to be effective in analyzing functional relationships of genes. However, no single clustering method with single distance metric is capable of capturing ...
Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, Haka...
NAR
2010
123views more  NAR 2010»
14 years 5 months ago
Xenbase: gene expression and improved integration
Xenbase (www.xenbase.org), the model organism database for Xenopus laevis and X. (Silurana) tropicalis, is the principal centralized resource of genomic, development data and comm...
Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ch...