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» Density-Sensitive Evolutionary Clustering
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ECCB
2008
IEEE
15 years 3 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
FUZZIEEE
2007
IEEE
15 years 3 months ago
Survey of Rough and Fuzzy Hybridization
— This paper provides a broad overview of logical and black box approaches to fuzzy and rough hybridization. The logical approaches include theoretical, supervised learning, feat...
Pawan Lingras, Richard Jensen
ICPR
2006
IEEE
15 years 10 months ago
A Prototypes-Embedded Genetic K-means Algorithm
This paper presents a genetic algorithm (GA) for Kmeans clustering. Instead of the widely applied stringof-group-numbers encoding, we encode the prototypes of the clusters into th...
Hsin-Chia Fu, Hsin-Min Wang, Shih-Sian Cheng, Yi-H...
CEC
2007
IEEE
15 years 3 months ago
A co-evolutionary framework for regulatory motif discovery
Abstract— In previous work, we have shown how an evolutionary algorithm with a clustered population can be used to concurrently discover multiple regulatory motifs present within...
Michael A. Lones, Andy M. Tyrrell
BMCBI
2010
113views more  BMCBI 2010»
14 years 9 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu