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BMCBI
2006
138views more  BMCBI 2006»
15 years 2 months ago
Approximation properties of haplotype tagging
Background: Single nucleotide polymorphisms (SNPs) are locations at which the genomic sequences of population members differ. Since these differences are known to follow patterns,...
Staal A. Vinterbo, Stephan Dreiseitl, Lucila Ohno-...
129
Voted
TC
2010
15 years 9 days ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
SIGMOD
2010
ACM
214views Database» more  SIGMOD 2010»
15 years 6 months ago
ParaTimer: a progress indicator for MapReduce DAGs
Time-oriented progress estimation for parallel queries is a challenging problem that has received only limited attention. In this paper, we present ParaTimer, a new type of timere...
Kristi Morton, Magdalena Balazinska, Dan Grossman
DCOSS
2006
Springer
15 years 5 months ago
Distance-Sensitive Information Brokerage in Sensor Networks
In a sensor network information from multiple nodes must usually be aggregated in order to accomplish a certain task. A natural way to view this information gathering is in terms o...
Stefan Funke, Leonidas J. Guibas, An Nguyen, Yusu ...
IPPS
2003
IEEE
15 years 7 months ago
Autonomous Protocols for Bandwidth-Centric Scheduling of Independent-Task Applications
In this paper we investigate protocols for scheduling applications that consist of large numbers of identical, independent tasks on large-scale computing platforms. By imposing a ...
Barbara Kreaseck, Larry Carter, Henri Casanova, Je...