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BMCBI
2007
108views more  BMCBI 2007»
15 years 5 months ago
Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants
Background: Single nucleotide polymorphisms (SNPs) and genes that exhibit presence/absence variation have provided informative marker sets for bacterial and viral genotyping. Iden...
Erin P. Price, John Inman-Bamber, Venugopal Thiruv...
BMCBI
2007
139views more  BMCBI 2007»
15 years 5 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
CORR
2010
Springer
130views Education» more  CORR 2010»
15 years 5 months ago
Phase Transitions for Greedy Sparse Approximation Algorithms
A major enterprise in compressed sensing and sparse approximation is the design and analysis of computationally tractable algorithms for recovering sparse, exact or approximate, s...
Jeffrey D. Blanchard, Coralia Cartis, Jared Tanner...
BMCBI
2005
118views more  BMCBI 2005»
15 years 5 months ago
Variation in structural location and amino acid conservation of functional sites in protein domain families
Background: The functional sites of a protein present important information for determining its cellular function and are fundamental in drug design. Accordingly, accurate methods...
Birgit Pils, Richard R. Copley, Jörg Schultz
TALG
2010
86views more  TALG 2010»
15 years 3 months ago
Approximating corridors and tours via restriction and relaxation techniques
Given a rectangular boundary partitioned into rectangles, the Minimum-Length Corridor (MLC-R) problem consists of finding a corridor of least total length. A corridor is a set of ...
Arturo Gonzalez-Gutierrez, Teofilo F. Gonzalez