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» Design tools for reliability analysis
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BMCBI
2010
148views more  BMCBI 2010»
13 years 6 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
BMCBI
2010
95views more  BMCBI 2010»
13 years 6 months ago
An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
Background: ChIP-Seq, which combines chromatin immunoprecipitation (ChIP) with high-throughput massively parallel sequencing, is increasingly being used for identification of prot...
Congmao Wang, Jie Xu, Dasheng Zhang, Zoe A. Wilson...
BMCBI
2008
117views more  BMCBI 2008»
13 years 6 months ago
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, ...
BMCBI
2006
98views more  BMCBI 2006»
13 years 6 months ago
JLIN: A java based linkage disequilibrium plotter
Background: A great deal of effort and expense are being expended internationally in attempts to detect genetic polymorphisms contributing to susceptibility to complex human disea...
Kim W. Carter, Pamela A. McCaskie, Lyle J. Palmer
CPHYSICS
2006
85views more  CPHYSICS 2006»
13 years 6 months ago
Simulation of n-qubit quantum systems. II. Separability and entanglement
Studies on the entanglement of n-qubit quantum systems have attracted a lot of interest during recent years. Despite the central role of entanglement in quantum information theory...
T. Radtke, S. Fritzsche