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ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
14 years 7 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...
BMCBI
2010
190views more  BMCBI 2010»
14 years 10 months ago
A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
Background: DNA signatures are distinct short nucleotide sequences that provide valuable information that is used for various purposes, such as the design of Polymerase Chain Reac...
Hsiao Ping Lee, Tzu-Fang Sheu, Chuan Yi Tang
BMCBI
2006
102views more  BMCBI 2006»
14 years 9 months ago
UVPAR: fast detection of functional shifts in duplicate genes
Background: The imprint of natural selection on gene sequences is often difficult to detect. A plethora of methods have been devised to detect genetic changes due to selective pro...
Vicente Arnau, Miguel Gallach, J. Ignasi Lucas, Ig...
MST
2000
101views more  MST 2000»
14 years 9 months ago
Robust Parallel Computations through Randomization
In this paper we present an efficient general simulation strategy for computations designed for fully operational BSP machines of n ideal processors, on n-processor dynamic-fault-p...
Spyros C. Kontogiannis, Grammati E. Pantziou, Paul...
SBBD
2004
119views Database» more  SBBD 2004»
14 years 11 months ago
Computing the Dependency Basis for Nested List Attributes
Multi-valued dependencies (MVDs) are an important class of constraints that is fundamental for relational database design. Although modern applications increasingly require the su...
Sven Hartmann, Sebastian Link