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ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
14 years 9 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...
95
Voted
BMCBI
2010
190views more  BMCBI 2010»
14 years 11 months ago
A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
Background: DNA signatures are distinct short nucleotide sequences that provide valuable information that is used for various purposes, such as the design of Polymerase Chain Reac...
Hsiao Ping Lee, Tzu-Fang Sheu, Chuan Yi Tang
92
Voted
BMCBI
2006
102views more  BMCBI 2006»
14 years 11 months ago
UVPAR: fast detection of functional shifts in duplicate genes
Background: The imprint of natural selection on gene sequences is often difficult to detect. A plethora of methods have been devised to detect genetic changes due to selective pro...
Vicente Arnau, Miguel Gallach, J. Ignasi Lucas, Ig...
90
Voted
MST
2000
101views more  MST 2000»
14 years 11 months ago
Robust Parallel Computations through Randomization
In this paper we present an efficient general simulation strategy for computations designed for fully operational BSP machines of n ideal processors, on n-processor dynamic-fault-p...
Spyros C. Kontogiannis, Grammati E. Pantziou, Paul...
SBBD
2004
119views Database» more  SBBD 2004»
15 years 1 months ago
Computing the Dependency Basis for Nested List Attributes
Multi-valued dependencies (MVDs) are an important class of constraints that is fundamental for relational database design. Although modern applications increasingly require the su...
Sven Hartmann, Sebastian Link