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» Designing Nucleotide Sequences for Computation: A Survey of ...
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NAR
2011
216views Computer Vision» more  NAR 2011»
12 years 9 months ago
dbDNV: a resource of duplicated gene nucleotide variants in human genome
Gene duplications are scattered widely throughout the human genome. A single-base difference located in nearly identical duplicated segments may be misjudged as a single nucleotid...
Meng-Ru Ho, Kuo-Wang Tsai, Chun-houh Chen, Wen-cha...
BMCBI
2007
134views more  BMCBI 2007»
13 years 6 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
CDB
2004
Springer
172views Database» more  CDB 2004»
13 years 11 months ago
Constraint Database Solutions to the Genome Map Assembly Problem
Abstract. Long DNA sequences have to be cut using restriction enzymes into small fragments whose lengths and/or nucleotide sequences can be analyzed by currently available technolo...
Viswanathan Ramanathan, Peter Z. Revesz
IPPS
2010
IEEE
13 years 4 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
IJSM
2007
85views more  IJSM 2007»
13 years 6 months ago
Constraint Modeling for Curves and Surfaces in CAGD: a Survey
Computer-Aided Geometric Design modelers are now based on powerful mathematical curve and surface models, but there is still a considerable need for efficient tools to handle, ana...
Vincent Cheutet, Marc Daniel, Stefanie Hahmann, Ra...