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RECOMB
2009
Springer
16 years 7 months ago
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information
Abstract. Hierarchical clustering is a popular method for grouping together similar elements based on a distance measure between them. In many cases, annotation information for som...
Saket Navlakha, James Robert White, Niranjan Nagar...
TLDI
2010
ACM
225views Formal Methods» more  TLDI 2010»
16 years 3 months ago
Race-free and memory-safe multithreading: design and implementation in cyclone
We present the design of a formal low-level multi-threaded language with advanced region-based memory management and synchronization primitives, where well-typed programs are memo...
Prodromos Gerakios, Nikolaos Papaspyrou, Konstanti...
RECOMB
2004
Springer
16 years 6 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
HICSS
2012
IEEE
251views Biometrics» more  HICSS 2012»
14 years 2 months ago
Topology Skewing for Improved Route Selection in Wireless Multi-hop Networks
—The selection of a path in a network from one node to another is performed by a routing protocol, often using the shortest path approach. However, it has been shown that in wire...
Winston Khoon Guan Seah, Alvin C. Valera, Pius W. ...
BMCBI
2010
118views more  BMCBI 2010»
15 years 6 months ago
svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identifica
Background: Comparative analysis of gene expression profiling of multiple biological categories, such as different species of organisms or different kinds of tissue, promises to e...
Wensheng Zhang, Andrea Edwards, Wei Fan, Dongxiao ...