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BMCBI
2010
141views more  BMCBI 2010»
14 years 12 months ago
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Background: One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of th...
Franziska Hoffgaard, Philipp Weil, Kay Hamacher
BMCBI
2010
175views more  BMCBI 2010»
14 years 12 months ago
Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base
Background: The Salivaomics Knowledge Base (SKB) is designed to serve as a computational infrastructure that can permit global exploration and utilization of data and information ...
Jiye Ai, Barry Smith, Wong T. David
BMCBI
2007
151views more  BMCBI 2007»
14 years 12 months ago
Minimus: a fast, lightweight genome assembler
Background: Genome assemblers have grown very large and complex in response to the need for algorithms to handle the challenges of large whole-genome sequencing projects. Many of ...
Daniel D. Sommer, Arthur L. Delcher, Steven L. Sal...
ALGORITHMICA
2006
86views more  ALGORITHMICA 2006»
14 years 11 months ago
Slabpose Columnsort: A New Oblivious Algorithm for Out-of-Core Sorting on Distributed-Memory Clusters
Our goal is to develop a robust out-of-core sorting program for a distributed-memory cluster. The literature contains two dominant paradigms for out-of-core sorting algorithms: me...
Geeta Chaudhry, Thomas H. Cormen
IANDC
2008
105views more  IANDC 2008»
14 years 11 months ago
Symbolic protocol analysis for monoidal equational theories
We are interested in the design of automated procedures for analyzing the (in)security of cryptographic protocols in the Dolev-Yao model for a bounded number of sessions when we t...
Stéphanie Delaune, Pascal Lafourcade, Denis...