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» Detecting False Matches in String Matching Algorithms
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CPM
2000
Springer
175views Combinatorics» more  CPM 2000»
15 years 7 months ago
Approximate String Matching over Ziv-Lempel Compressed Text
Abstract. We present a solution to the problem of performing approximate pattern matching on compressed text. The format we choose is the Ziv-Lempel family, speci cally the LZ78 an...
Juha Kärkkäinen, Gonzalo Navarro, Esko U...
SIGMOD
2008
ACM
100views Database» more  SIGMOD 2008»
15 years 2 months ago
Incorporating string transformations in record matching
Today's record matching infrastructure does not allow a flexible way to account for synonyms such as "Robert" and "Bob" which refer to the same name, and ...
Arvind Arasu, Surajit Chaudhuri, Kris Ganjam, Ragh...
DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
15 years 8 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
15 years 9 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...
CORR
2011
Springer
198views Education» more  CORR 2011»
14 years 9 months ago
Pattern matching in Lempel-Ziv compressed strings: fast, simple, and deterministic
Countless variants of the Lempel-Ziv compression are widely used in many real-life applications. This paper is concerned with a natural modification of the classical pattern match...
Pawel Gawrychowski