Sciweavers

910 search results - page 43 / 182
» Detecting False Matches in String Matching Algorithms
Sort
View
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
15 years 5 months ago
On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification
Recent studies in protein sequence analysis have leveraged the power of unlabeled data. For example, the profile and mismatch neighborhood kernels have shown significant improveme...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
15 years 8 months ago
Using Parallel Algorithms for Searching Molecular Sequence Databases
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity ...
Carla Correa Tavares dos Reis, Rubem P. Mondaini
AAIM
2007
Springer
106views Algorithms» more  AAIM 2007»
15 years 7 months ago
A New Efficient Algorithm for Computing the Longest Common Subsequence
Abstract. The Longest Common Subsequence (LCS) problem is a classic and well-studied problem in computer science. The LCS problem is a common task in DNA sequence analysis with man...
M. Sohel Rahman, Costas S. Iliopoulos
ISAAC
2003
Springer
117views Algorithms» more  ISAAC 2003»
15 years 8 months ago
Approximate Regular Expression Searching with Arbitrary Integer Weights
Abstract. We present a bit-parallel technique to search a text of length n for a regular expression of m symbols permitting k differences in worst case time O(mn/ logk s), where s...
Gonzalo Navarro
ICPR
2010
IEEE
15 years 6 months ago
Spatial Representation for Efficient Sequence Classification
We present a general, simple feature representation of sequences that allows efficient inexact matching, comparison and classification of sequential data. This approach, recently ...
Pavel Kuksa, Vladimir Pavlovic