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» Detecting Motifs from Sequences
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BMCBI
2005
104views more  BMCBI 2005»
14 years 9 months ago
A statistical approach for array CGH data analysis
Background: Microarray-CGH experiments are used to detect and map chromosomal imbalances, by hybridizing targets of genomic DNA from a test and a reference sample to sequences imm...
Franck Picard, Stéphane Robin, Marc Laviell...
QEST
2009
IEEE
15 years 4 months ago
Recent Extensions to Traviando
—Traviando is a trace analyzer and visualizer for simulation traces of discrete event dynamic systems. In this paper, we briefly outline recent extensions of Traviando towards a...
Peter Kemper
CGO
2008
IEEE
15 years 4 months ago
Prediction and trace compression of data access addresses through nested loop recognition
This paper describes an algorithm that takes a trace (i.e., a sequence of numbers or vectors of numbers) as input, and from that produces a sequence of loop nests that, when run, ...
Alain Ketterlin, Philippe Clauss
BMCBI
2008
187views more  BMCBI 2008»
14 years 10 months ago
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Background: The conservation of gene order among prokaryotic genomes can provide valuable insight into gene function, protein interactions, or events by which genomes have evolved...
Christine Fong, Laurence Rohmer, Matthew Radey, Mi...
BMCBI
2006
102views more  BMCBI 2006»
14 years 10 months ago
Protein secondary structure prediction for a single-sequence using hidden semi-Markov models
Background: The accuracy of protein secondary structure prediction has been improving steadily towards the 88% estimated theoretical limit. There are two types of prediction algor...
Zafer Aydin, Yucel Altunbasak, Mark Borodovsky